PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G282400.1
Common NameB456_008G282400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 283aa    MW: 31779.7 Da    PI: 9.5554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G282400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-1369119355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         + h e+Er+RR+++ s ++ Lr+llP       ++K s ++   +Av+YIk+L+
  Gorai.008G282400.1  69 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 119
                         67*************************77...********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41866118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-1266123No hitNo description
SuperFamilySSF474593.01E-1467135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1169119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1170134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-672124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLPLHQSDDL VYQIFSHTKQ HKIPQDPITG HTVVVESNPI ISNPTVKNRG RKICHMEGGA  60
GSDKYKKQKL HREIERQRRQ DMASLYASLR SLLPGEYIKG KRSMSDHMNE AVNYIKHLEK  120
KVKDLDAKRH ELKRVSDLAS VGSRTKPAAA SISNHCFIIR PCLIGIEIMF RCGVEDQDLS  180
LSRVLAVLVD EGLHVVSCFS TKSEEFLFHT IQTEVNDPTS VNISRLQQKL PQSSEHCTAS  240
SLRPKMKVPK VATWLVRSMC IYIYFISNLN NGVMCGAASQ AN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440233.11e-175PREDICTED: transcription factor bHLH118
TrEMBLA0A0D2RNY10.0A0A0D2RNY1_G
STRINGPOPTR_0015s14070.16e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.14e-41bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]